Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs62357612 chr5:40866194 C/T 4.11E-5 372 22.37 21.43 26.1 KM Plot
CRC rs62359221 chr5:54594807 G/A 5.55E-5 371 22.32 24.35 9.67 KM Plot
CRC rs62359226 chr5:54611158 A/C 3.27E-7 370 21.9 24.5 5.73 KM Plot
CRC rs62359228 chr5:54616276 A/C 6.72E-7 370 22.3 23.43 9.87 KM Plot
CRC rs62359229 chr5:54616287 T/C 6.72E-7 370 22.3 23.43 9.87 KM Plot
CRC rs62360496 chr5:54645791 C/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs62360497 chr5:54653919 C/T 2.21E-7 371 22.07 24.5 5.73 KM Plot
CRC rs62360502 chr5:54667375 C/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs62360528 chr5:54671752 G/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs62360531 chr5:54681626 C/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs62450471 chr7:57775621 C/T 1.44E-6 365 23.6 20.7 11.92 KM Plot
CRC rs62451092 chr7:57830083 G/T 1.39E-5 372 23.37 20.3 11.92 KM Plot
CRC rs62460226 chr7:61062965 C/A 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs62460239 chr7:61069538 C/A 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs62476143 chr7:62005180 C/G 9.77E-7 364 22.75 19.87 11.27 KM Plot